q2-SCNIC: A tool for making correlation networks, finding modules of ...
Sep 20, 2018 · q2-SCNIC: Community Tutorial SCNIC (Sparse Cooccurnce Network Investigation for Compositional data) is a tool for building correlation networks from feature tables, finding modules in …
how to reference the plugins used - QIIME 2 Forum
Jan 8, 2022 · I wanted to ask if anyone can help me to know how to cite the qiime plugins (permanova, shannon, observed features, evenness, faith phylogenetic tree, braycurtis, scenic plugin, taxa …
Importing bins/mags into Qiime2 - Technical Support - QIIME 2 Forum
Mar 31, 2025 · Dear devs, dear users I am processing metagenome dataset. I currently follow the q2-moshpit: A set of tutorials showcasing shotgun metagenomics analysis workflows, but I modified …
PhD Opportunity - Soil Microbial Ecology - QIIME 2 Forum
Mar 23, 2023 · UTSA is a public research university and a Hispanic-Serving Institution located in scenic San Antonio, Texas. The main campus, where the graduate position will be housed, enrolls ~34,000 …
q2-SCNIC installation - Library Support - QIIME 2 Forum
Aug 17, 2021 · I'm new to using QIIME2. I have installation problem with q2-SCNIC now. I fallowed this installation guide GitHub - lozuponelab/q2-SCNIC: A QIIME2 plugin for running SCNIC and it has …
taxonomy mitochondria vs D_4__Mitochondria - General Discussion
Apr 21, 2025 · Hi everyone, I have just finished going through my qiime2 analysis following the moving pictures and fecal sample tutorial (for merging). I have created my phyloseq object using the …
q2 fondue get-ids-error: Object of type set is not JSON serializable ...
Aug 11, 2025 · This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.
Plugin error from diversity: [Errno 8] Exec format error: 'faithpd'
Sep 26, 2023 · Technical Support diversity Elnaz_Vjd96 (Elnaz Vjd96) September 26, 2023, 4:36pm 1 Hi, using this script to perform the beta-div: (qiime2-2023.7)
PERMANOVA results significant, but differential abundance results ...
Oct 19, 2025 · Hello, I am performing a study about differences in microbial communities between two sample types in an Antarctic ecosystem. According to PERMANOVA, there are significant …
Importing NCBI SRA sequences - User Support - QIIME 2 Forum
Mar 21, 2022 · Hello everyone, I have downloaded some sequences from NCBI and I am having some troubles uploading them into qiime. The sequences are forward and reverse and look like this: …